Virus Integration Site Database Data Release 2.0

Details for VISDB ID: TVIS30004957

Genomic Region Visualization (IGV)

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Basic Information
VISDB IDTVIS30004957
Fusion NameHIV-STYXL1 integration
ValidatedNo
Curated WayVISDB1.0
MethodQiaQuick PCR and Sequencing
Wet AssayNo
Sample IDBcl-2 transduced CD4+
Sample NameBcl-2 transduced CD4+
Sample TypeCell line
Age-
Gender-
Disease Information
Disease NameHIV-infected disease
Disease AbbreviationHID
CancerNo
Literature
PubMed ID23953889
JournalRetrovirology
Published Year2013
Human Genome
Human Genome Version DescriptionGRCh37/hg19
Human Genome RefSeq AccessionGCF_000001405.13
Human Chromosomechr7
Cytogenetic Bandq11.23
Human Strand-
Human Integration Location TypeIntronic
Hg19 Start75647867
Hg19 End75647867
Hg38 Start76018549
Hg38 End76018549
Junction Sequence-
Target Gene
Target GeneSTYXL1
Nearby Gene-
Distance-
Virus Information
Virus NameHuman Immunodeficiency Virus
Virus Subtype Name-
Virus Genome AccessionNot given
TaxonomyID11676
Virus AbbreviationHIV
Virus Genome-
Virus Genome Length9719
Virus Breakpoint1-
Virus Breakpoint2-
Virus Gene Name-
Virus Region Type-
Integrated Virus Sequence-
ViMIC ID-