Virus Integration Site Database Data Release 2.0

Details for VISDB ID: TVIS30004987

Genomic Region Visualization (IGV)

Basic Information
VISDB IDTVIS30004987
Fusion NameHIV-DGAT1 integration
ValidatedNo
Curated WayVISDB1.0
MethodQiaQuick PCR and Sequencing
Wet AssayNo
Sample IDBcl-2 transduced CD4+
Sample NameBcl-2 transduced CD4+
Sample TypeCell line
Age-
Gender-
Disease Information
Disease NameHIV-infected disease
Disease AbbreviationHID
CancerNo
Literature
PubMed ID23953889
JournalRetrovirology
Published Year2013
Human Genome
Human Genome Version DescriptionGRCh37/hg19
Human Genome RefSeq AccessionGCF_000001405.13
Human Chromosomechr8
Cytogenetic Bandq24.3
Human Strand+
Human Integration Location TypeIntronic
Hg19 Start145544024
Hg19 End145544024
Hg38 Start144320361
Hg38 End144320361
Junction Sequence-
Target Gene
Target GeneDGAT1
Nearby Gene-
Distance-
Virus Information
Virus NameHuman Immunodeficiency Virus
Virus Subtype Name-
Virus Genome AccessionNot given
TaxonomyID11676
Virus AbbreviationHIV
Virus Genome-
Virus Genome Length9719
Virus Breakpoint1-
Virus Breakpoint2-
Virus Gene Name-
Virus Region Type-
Integrated Virus Sequence-
ViMIC ID-