Virus Integration Site Database Data Release 2.0

Details for VISDB ID: TVIS30005678

Genomic Region Visualization (IGV)

Basic Information
VISDB IDTVIS30005678
Fusion NameHIV-ARMH3 integration
ValidatedNo
Curated WayVISDB1.0
MethodQiaQuick PCR and Sequencing
Wet AssayNo
Sample IDCentral Memory CD4+
Sample NameCentral Memory CD4+
Sample TypeCell line
Age-
Gender-
Disease Information
Disease NameHIV-infected disease
Disease AbbreviationHID
CancerNo
Literature
PubMed ID23953889
JournalRetrovirology
Published Year2013
Human Genome
Human Genome Version DescriptionGRCh37/hg19
Human Genome RefSeq AccessionGCF_000001405.13
Human Chromosomechr10
Cytogenetic Bandq24.32
Human Strand-
Human Integration Location TypeIntronic
Hg19 Start103709024
Hg19 End103709024
Hg38 Start101949267
Hg38 End101949267
Junction Sequence-
Target Gene
Target GeneARMH3
Nearby Gene-
Distance-
Virus Information
Virus NameHuman Immunodeficiency Virus
Virus Subtype Name-
Virus Genome AccessionNot given
TaxonomyID11676
Virus AbbreviationHIV
Virus Genome-
Virus Genome Length9719
Virus Breakpoint1-
Virus Breakpoint2-
Virus Gene Name-
Virus Region Type-
Integrated Virus Sequence-
ViMIC ID-