Virus Integration Site Database Data Release 2.0

Details for VISDB ID: TVIS30007354

Genomic Region Visualization (IGV)

Basic Information
VISDB IDTVIS30007354
Fusion NameHIV-ADNP2 integration
ValidatedNo
Curated WayVISDB1.0
MethodQiaQuick PCR and Sequencing
Wet AssayNo
Sample IDCentral Memory CD4+
Sample NameCentral Memory CD4+
Sample TypeCell line
Age-
Gender-
Disease Information
Disease NameHIV-infected disease
Disease AbbreviationHID
CancerNo
Literature
PubMed ID23953889
JournalRetrovirology
Published Year2013
Human Genome
Human Genome Version DescriptionGRCh37/hg19
Human Genome RefSeq AccessionGCF_000001405.13
Human Chromosomechr18
Cytogenetic Bandq23
Human Strand-
Human Integration Location TypeIntronic
Hg19 Start77883824
Hg19 End77883824
Hg38 Start80125941
Hg38 End80125941
Junction Sequence-
Target Gene
Target GeneADNP2
Nearby Gene-
Distance-
Virus Information
Virus NameHuman Immunodeficiency Virus
Virus Subtype Name-
Virus Genome AccessionNot given
TaxonomyID11676
Virus AbbreviationHIV
Virus Genome-
Virus Genome Length9719
Virus Breakpoint1-
Virus Breakpoint2-
Virus Gene Name-
Virus Region Type-
Integrated Virus Sequence-
ViMIC ID-