Virus Integration Site Database Data Release 2.0

Details for VISDB ID: TVIS30012942

Genomic Region Visualization (IGV)

Basic Information
VISDB IDTVIS30012942
Fusion NameHIV-chr22 integration
ValidatedNo
Curated WayVISDB1.0
MethodQiaQuick PCR and Sequencing
Wet AssayNo
Sample IDResting CD4+
Sample NameResting CD4+
Sample TypeCell line
Age-
Gender-
Disease Information
Disease NameHIV-infected disease
Disease AbbreviationHID
CancerNo
Literature
PubMed ID23953889
JournalRetrovirology
Published Year2013
Human Genome
Human Genome Version DescriptionGRCh37/hg19
Human Genome RefSeq AccessionGCF_000001405.13
Human Chromosomechr22
Cytogenetic Bandq11.1
Human Strand+
Human Integration Location TypeIntergenic
Hg19 Start17558305
Hg19 End17558305
Hg38 Start17077415
Hg38 End17077415
Junction Sequence-
Target Gene
Target Gene-
Nearby GeneENSG00000273442
Distance3286
Virus Information
Virus NameHuman Immunodeficiency Virus
Virus Subtype Name-
Virus Genome AccessionNot given
TaxonomyID11676
Virus AbbreviationHIV
Virus Genome-
Virus Genome Length9719
Virus Breakpoint1-
Virus Breakpoint2-
Virus Gene Name-
Virus Region Type-
Integrated Virus Sequence-
ViMIC ID-