Virus Integration Site Database Data Release 2.0

Details for VISDB ID: TVIS30013068

Genomic Region Visualization (IGV)

Basic Information
VISDB IDTVIS30013068
Fusion NameHIV-GLB1 integration
ValidatedNo
Curated WayVISDB1.0
MethodQiaQuick PCR and Sequencing
Wet AssayNo
Sample IDResting CD4+
Sample NameResting CD4+
Sample TypeCell line
Age-
Gender-
Disease Information
Disease NameHIV-infected disease
Disease AbbreviationHID
CancerNo
Literature
PubMed ID23953889
JournalRetrovirology
Published Year2013
Human Genome
Human Genome Version DescriptionGRCh37/hg19
Human Genome RefSeq AccessionGCF_000001405.13
Human Chromosomechr3
Cytogenetic Bandp22.3
Human Strand+
Human Integration Location TypeUTR3
Hg19 Start33038118
Hg19 End33038118
Hg38 Start32996626
Hg38 End32996626
Junction Sequence-
Target Gene
Target GeneGLB1
Nearby Gene-
Distance-
Virus Information
Virus NameHuman Immunodeficiency Virus
Virus Subtype Name-
Virus Genome AccessionNot given
TaxonomyID11676
Virus AbbreviationHIV
Virus Genome-
Virus Genome Length9719
Virus Breakpoint1-
Virus Breakpoint2-
Virus Gene Name-
Virus Region Type-
Integrated Virus Sequence-
ViMIC ID-