Virus Integration Site Database Data Release 2.0

Details for VISDB ID: TVIS30013917

Genomic Region Visualization (IGV)

Basic Information
VISDB IDTVIS30013917
Fusion NameHIV-FAM114A1 integration
ValidatedYes
Curated WayVISDB1.0
MethodinversePCR+Real-time PCR
Wet AssayYes
Sample ID21
Sample Name21
Sample TypeT cell
Age-
Gender-
Disease Information
Disease NameHIV-infected disease
Disease AbbreviationHID
CancerNo
Literature
PubMed ID15163705
JournalJOURNAL OF VIROLOGY
Published Year2004
Human Genome
Human Genome Version DescriptionGRCh37/hg19
Human Genome RefSeq AccessionGCF_000001405.13
Human Chromosomechr4
Cytogenetic Bandp14
Human Strand
Human Integration Location TypeIntronic
Hg19 Start38598772
Hg19 End38598772
Hg38 Start38597151
Hg38 End38597151
Junction Sequence-
Target Gene
Target GeneKLF3-AS1
Nearby Gene-
Distance-
Virus Information
Virus NameHuman Immunodeficiency Virus
Virus Subtype Name-
Virus Genome AccessionNot given
TaxonomyID11676
Virus AbbreviationHIV
Virus Genome-
Virus Genome Length9719
Virus Breakpoint1-
Virus Breakpoint2-
Virus Gene Name-
Virus Region Type-
Integrated Virus Sequence-
ViMIC ID-