Virus Integration Site Database Data Release 2.0

Details for VISDB ID: TVIS30013976

Genomic Region Visualization (IGV)

Basic Information
VISDB IDTVIS30013976
Fusion NameHIV-FOSL2 integration
ValidatedYes
Curated WayVISDB1.0
MethodinversePCR+Real-time PCR
Wet AssayYes
Sample ID153
Sample Name153
Sample TypeT cell
Age-
Gender-
Disease Information
Disease NameHIV-infected disease
Disease AbbreviationHID
CancerNo
Literature
PubMed ID15163705
JournalJOURNAL OF VIROLOGY
Published Year2004
Human Genome
Human Genome Version DescriptionGRCh37/hg19
Human Genome RefSeq AccessionGCF_000001405.13
Human Chromosomechr2
Cytogenetic Bandp23.2
Human Strand+
Human Integration Location Typeupstream
Hg19 Start28469242
Hg19 End28469242
Hg38 Start28246375
Hg38 End28246375
Junction Sequence-
Target Gene
Target GeneBABAM2
Nearby Gene-
Distance-
Virus Information
Virus NameHuman Immunodeficiency Virus
Virus Subtype Name-
Virus Genome AccessionNot given
TaxonomyID11676
Virus AbbreviationHIV
Virus Genome-
Virus Genome Length9719
Virus Breakpoint1-
Virus Breakpoint2-
Virus Gene Name-
Virus Region Type-
Integrated Virus Sequence-
ViMIC ID-