Virus Integration Site Database Data Release 2.0

Details for VISDB ID: TVIS30014447

Genomic Region Visualization (IGV)

Basic Information ▶
VISDB IDTVIS30014447
Fusion NameHIV-GNB1 integration
ValidatedYes
Curated WayVISDB1.0
Methodligation mediated PCR
Wet AssayYes
Sample IDPT3
Sample NamePT3
Sample TypePBMC
Age52
Gender-
Disease Information ▶
Disease NameHIV-infected disease
Disease AbbreviationHID
CancerNo
Literature ▶
PubMed ID24968937
JournalScience
Published Year2014
Human Genome ▶
Human Genome Version DescriptionGRCh37/hg19
Human Genome RefSeq AccessionGCF_000001405.13
Human Chromosomechr1
Cytogenetic Bandp36.33
Human Strand+
Human Integration Location TypeIntronic
Hg19 Start1735043
Hg19 End1735120
Hg38 Start1803604
Hg38 End1803604
Junction SequenceTAAAGGCATATCAGGCTTGTTTTTAGTTTCATTTTCAGAAAACTTCTGGCCATTACTGTGACTTTTATTTGAACCAG
Target Gene ▶
Target GeneGNB1
Nearby Gene-
Distance-
Virus Information ▶
Virus NameHuman Immunodeficiency Virus
Virus Subtype Name-
Virus Genome AccessionNot given
TaxonomyID11676
Virus AbbreviationHIV
Virus Genome-
Virus Genome Length9719
Virus Breakpoint1-
Virus Breakpoint2-
Virus Gene Name-
Virus Region Type-
Integrated Virus Sequence-
ViMIC ID-
Predicted VIS Effect ▶
Gene IdENSG00000078369.20
Gene NameGNB1
Regionintron
Impactintronic_insertion
TranscriptTranscript 1: ENST00000615252.5, Transcript 2: ENST00000610897.4, Transcript 3: ENST00000899377.1, Transcript 4: ENST00000899376.1, Transcript 5: ENST00000947532.1, Transcript 6: ENST00000916702.1, Transcript 7: ENST00000899369.1, Transcript 8: ENST00000916694.1, Transcript 9: ENST00000947523.1, Transcript 10: ENST00000378609.9, Transcript 11: ENST00000916690.1, Transcript 12: ENST00000899368.1, Transcript 13: ENST00000916685.1, Transcript 14: ENST00000899366.1, Transcript 15: ENST00000899388.1, Transcript 16: ENST00000899387.1, Transcript 17: ENST00000899373.1, Transcript 18: ENST00000947530.1, Transcript 19: ENST00000947522.1, Transcript 20: ENST00000916691.1, Transcript 21: ENST00000916687.1, Transcript 22: ENST00000947516.1, Transcript 23: ENST00000899375.1, Transcript 24: ENST00000899374.1, Transcript 25: ENST00000899370.1, Transcript 26: ENST00000947525.1, Transcript 27: ENST00000947524.1, Transcript 28: ENST00000947521.1, Transcript 29: ENST00000916689.1, Transcript 30: ENST00000916684.1, Transcript 31: ENST00000916688.1, Transcript 32: ENST00000916686.1, Transcript 33: ENST00000916682.1, Transcript 34: ENST00000916713.1, Transcript 35: ENST00000899379.1, Transcript 36: ENST00000916705.1, Transcript 37: ENST00000916703.1, Transcript 38: ENST00000916700.1, Transcript 39: ENST00000916699.1, Transcript 40: ENST00000916692.1, Transcript 41: ENST00000947534.1, Transcript 42: ENST00000947526.1, Transcript 43: ENST00000947520.1, Transcript 44: ENST00000899367.1, Transcript 45: ENST00000947518.1, Transcript 46: ENST00000899389.1, Transcript 47: ENST00000947540.1, Transcript 48: ENST00000947533.1, Transcript 49: ENST00000916698.1, Transcript 50: ENST00000947519.1, Transcript 51: ENST00000947517.1, Transcript 52: ENST00000899378.1, Transcript 53: ENST00000947528.1, Transcript 54: ENST00000916696.1, Transcript 55: ENST00000916697.1, Transcript 56: ENST00000947527.1, Transcript 57: ENST00000916695.1, Transcript 58: ENST00000916693.1, Transcript 59: ENST00000916683.1, Transcript 60: ENST00000916701.1, Transcript 61: ENST00000439272.7, Transcript 62: ENST00000703692.1, Transcript 63: ENST00000703693.1, Transcript 64: ENST00000703694.1, Transcript 65: ENST00000703695.1, Transcript 66: ENST00000703696.1, Transcript 67: ENST00000703697.1, Transcript 68: ENST00000703699.1, Transcript 69: ENST00000703700.1, Transcript 70: ENST00000703701.1, Transcript 71: ENST00000703702.1, Transcript 72: ENST00000703703.1, Transcript 73: ENST00000703704.1, Transcript 74: ENST00000947541.1, Transcript 75: ENST00000703705.1, Transcript 76: ENST00000916704.1, Transcript 77: ENST00000899384.1, Transcript 78: ENST00000899380.1, Transcript 79: ENST00000947531.1, Transcript 80: ENST00000947529.1, Transcript 81: ENST00000947536.1, Transcript 82: ENST00000947535.1, Transcript 83: ENST00000899372.1, Transcript 84: ENST00000947537.1, Transcript 85: ENST00000703706.1, Transcript 86: ENST00000703707.1, Transcript 87: ENST00000703708.1, Transcript 88: ENST00000703709.1, Transcript 89: ENST00000916714.1, Transcript 90: ENST00000916712.1, Transcript 91: ENST00000916711.1, Transcript 92: ENST00000916710.1, Transcript 93: ENST00000916709.1, Transcript 94: ENST00000899385.1, Transcript 95: ENST00000916708.1, Transcript 96: ENST00000916706.1, Transcript 97: ENST00000899386.1, Transcript 98: ENST00000899381.1, Transcript 99: ENST00000947539.1, Transcript 100: ENST00000916707.1, Transcript 101: ENST00000916715.1, Transcript 102: ENST00000947538.1, Transcript 103: ENST00000899371.1, Transcript 104: ENST00000899383.1, Transcript 105: ENST00000899382.1, Transcript 106: ENST00000703710.1, Transcript 107: ENST00000703711.1, Transcript 108: ENST00000471354.1, Transcript 109: ENST00000434686.6
SpliceAI Score
Delta ScoresAcceptor Gain: 0.000 | Acceptor Loss: 0.000 | Donor Gain: 0.000 | Donor Loss: 0.000
Delta Score Max0.000
Delta Position at Max-4
Delta Score FlagLOW
GeneGNB1
AlphaGenome Analysis
Chromosomechr1
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