| Basic Information ▼ | |
| VISDB ID | TVIS30014597 |
|---|---|
| Fusion Name | HIV-COPA integration |
| Validated | Yes |
| Curated Way | VISDB1.0 |
| Method | ligation mediated PCR |
| Wet Assay | Yes |
| Sample ID | PT1 |
| Sample Name | PT1 |
| Sample Type | PBMC |
| Age | 47 |
| Gender | - |
| Disease Information ▼ | |
| Disease Name | HIV-infected disease |
| Disease Abbreviation | HID |
| Cancer | No |
| Literature ▼ | |
| PubMed ID | 24968937 |
| Journal | Science |
| Published Year | 2014 |
| Human Genome ▼ | |
| Human Genome Version Description | GRCh37/hg19 |
| Human Genome RefSeq Accession | GCF_000001405.13 |
| Human Chromosome | chr1 |
| Cytogenetic Band | q23.2 |
| Human Strand | - |
| Human Integration Location Type | Intronic |
| Hg19 Start | 160291145 |
| Hg19 End | 160291031 |
| Hg38 Start | 160321355 |
| Hg38 End | 160321355 |
| Junction Sequence | cttaatgggaaaaaattgaaggccttttctctacggaccagaaggcaaggatgcccacttttaccacttttattcgacaaaacactagaagtcctggccaggtcaagtaggtat |
| Target Gene ▼ | |
| Target Gene | COPA |
| Nearby Gene | - |
| Distance | - |
| Virus Information ▼ | |
| Virus Name | Human Immunodeficiency Virus |
| Virus Subtype Name | - |
| Virus Genome Accession | Not given |
| TaxonomyID | 11676 |
| Virus Abbreviation | HIV |
| Virus Genome | - |
| Virus Genome Length | 9719 |
| Virus Breakpoint1 | - |
| Virus Breakpoint2 | - |
| Virus Gene Name | - |
| Virus Region Type | - |
| Integrated Virus Sequence | - |
| ViMIC ID | - |
Center for Precision Health
McWilliams School of Biomedical Informatics at UTHealth Houston
7000 Fannin Street, Suite 600, Houston, TX 77030
Email: Zhongming Zhao, Ph.D