| Basic Information ▶ | |
| VISDB ID | TVIS30014845 |
|---|---|
| Fusion Name | HIV-chr11 integration |
| Validated | Yes |
| Curated Way | VISDB1.0 |
| Method | ligation mediated PCR |
| Wet Assay | Yes |
| Sample ID | PT1 |
| Sample Name | PT1 |
| Sample Type | PBMC |
| Age | 47 |
| Gender | - |
| Disease Information ▶ | |
| Disease Name | HIV-infected disease |
| Disease Abbreviation | HID |
| Cancer | No |
| Literature ▶ | |
| PubMed ID | 24968937 |
| Journal | Science |
| Published Year | 2014 |
| Human Genome ▶ | |
| Human Genome Version Description | GRCh37/hg19 |
| Human Genome RefSeq Accession | GCF_000001405.13 |
| Human Chromosome | chr11 |
| Cytogenetic Band | q23.3 |
| Human Strand | + |
| Human Integration Location Type | Intronic |
| Hg19 Start | 117902092 |
| Hg19 End | 117902215 |
| Hg38 Start | 118031377 |
| Hg38 End | 118031377 |
| Junction Sequence | agtaccagcagggaaagtaaaagatgaatttgaatcatctttctgtgccacagcaacaataaggaaggtcctaaaatacaataggagcatgtcaaatgacatataagctagcttctattggac |
| Target Gene ▶ | |
| Target Gene | SMIM35 |
| Nearby Gene | - |
| Distance | - |
| Virus Information ▶ | |
| Virus Name | Human Immunodeficiency Virus |
| Virus Subtype Name | - |
| Virus Genome Accession | Not given |
| TaxonomyID | 11676 |
| Virus Abbreviation | HIV |
| Virus Genome | - |
| Virus Genome Length | 9719 |
| Virus Breakpoint1 | - |
| Virus Breakpoint2 | - |
| Virus Gene Name | - |
| Virus Region Type | - |
| Integrated Virus Sequence | - |
| ViMIC ID | - |
| Predicted VIS Effect ▶ | |
| Gene Id | ENSG00000255274.10 |
| Gene Name | SMIM35 |
| Region | intron |
| Impact | intronic_insertion |
| Transcript | Transcript 1: ENST00000689828.1, Transcript 2: ENST00000636151.1, Transcript 3: ENST00000527329.5, Transcript 4: ENST00000527695.1, Transcript 5: ENST00000606951.5 |
| AlphaGenome Analysis | |
| Window | chr11:117965841-118096913 |
| RNA-seq Change (±2kb) | Mean: -8.241212299253675e-07 | Peak: 0.00655364990234375 |
| ATAC Change (±2kb) | Mean: -0.0002607376081869006 | Peak: 2.9609375 |
| Interpretation | RNA-seq: no signal in region (REF≈0, ALT≈0) | Splice sites: no signal in region (REF≈0, ALT≈0) | ATAC: minimal change -1.0% |
| Visualization | |
Center for Precision Health
McWilliams School of Biomedical Informatics at UTHealth Houston
7000 Fannin Street, Suite 600, Houston, TX 77030
Email: Zhongming Zhao, Ph.D