Virus Integration Site Database Data Release 2.0

Details for VISDB ID: TVIS30015557

Genomic Region Visualization (IGV)

Basic Information
VISDB IDTVIS30015557
Fusion NameHIV-TNRC6C integration
ValidatedYes
Curated WayVISDB1.0
Methodligation mediated PCR
Wet AssayYes
Sample IDPT1
Sample NamePT1
Sample TypePBMC
Age47
Gender-
Disease Information
Disease NameHIV-infected disease
Disease AbbreviationHID
CancerNo
Literature
PubMed ID24968937
JournalScience
Published Year2014
Human Genome
Human Genome Version DescriptionGRCh37/hg19
Human Genome RefSeq AccessionGCF_000001405.13
Human Chromosomechr17
Cytogenetic Bandq25.3
Human Strand+
Human Integration Location TypeIntronic
Hg19 Start76083679
Hg19 End76083744
Hg38 Start78087598
Hg38 End78087598
Junction SequenceTTTACCAGCCACTGTCCTCCAGCCTAAACCACAGAGAAGACTTTATAATGGTTTGGTCAGTAAAA
Target Gene
Target GeneTNRC6C
Nearby Gene-
Distance-
Virus Information
Virus NameHuman Immunodeficiency Virus
Virus Subtype Name-
Virus Genome AccessionNot given
TaxonomyID11676
Virus AbbreviationHIV
Virus Genome-
Virus Genome Length9719
Virus Breakpoint1-
Virus Breakpoint2-
Virus Gene Name-
Virus Region Type-
Integrated Virus Sequence-
ViMIC ID-