| Basic Information ▶ | |
| VISDB ID | TVIS30015697 |
|---|---|
| Fusion Name | HIV-chr19 integration |
| Validated | Yes |
| Curated Way | VISDB1.0 |
| Method | ligation mediated PCR |
| Wet Assay | Yes |
| Sample ID | PT5 |
| Sample Name | PT5 |
| Sample Type | PBMC |
| Age | 44 |
| Gender | - |
| Disease Information ▶ | |
| Disease Name | HIV-infected disease |
| Disease Abbreviation | HID |
| Cancer | No |
| Literature ▶ | |
| PubMed ID | 24968937 |
| Journal | Science |
| Published Year | 2014 |
| Human Genome ▶ | |
| Human Genome Version Description | GRCh37/hg19 |
| Human Genome RefSeq Accession | GCF_000001405.13 |
| Human Chromosome | chr19 |
| Cytogenetic Band | p13.13 |
| Human Strand | - |
| Human Integration Location Type | Intergenic |
| Hg19 Start | 13283554 |
| Hg19 End | 13283441 |
| Hg38 Start | 13172740 |
| Hg38 End | 13172740 |
| Junction Sequence | CCTTGAGGCCACATGTCAAGACCATCCACACTGCCCTCTCCTGCTTCCTCCTCCTCTACCCGCCCTCTTTCAGTGGGATTTTTTTTTCCGGGTACCACGCTAGGGCAGGAAGG |
| Target Gene ▶ | |
| Target Gene | ENSG00000300728 |
| Nearby Gene | - |
| Distance | - |
| Virus Information ▶ | |
| Virus Name | Human Immunodeficiency Virus |
| Virus Subtype Name | - |
| Virus Genome Accession | Not given |
| TaxonomyID | 11676 |
| Virus Abbreviation | HIV |
| Virus Genome | - |
| Virus Genome Length | 9719 |
| Virus Breakpoint1 | - |
| Virus Breakpoint2 | - |
| Virus Gene Name | - |
| Virus Region Type | - |
| Integrated Virus Sequence | - |
| ViMIC ID | - |
| Predicted VIS Effect ▶ | |
| Gene Id | ENSG00000300728.1 |
| Gene Name | ENSG00000300728 |
| Region | intron |
| Impact | intronic_insertion |
| Transcript | Transcript 1: ENST00000773684.1, Transcript 2: ENST00000773685.1 |
| AlphaGenome Analysis | |
| Window | chr19:13107204-13238276 |
| RNA-seq Change (±2kb) | Mean: 8.731222624192014e-05 | Peak: 0.265625 |
| ATAC Change (±2kb) | Mean: 0.0019910105038434267 | Peak: 16.419921875 |
| Interpretation | RNA-seq: no signal in region (REF≈0, ALT≈0) | Splice sites: no signal in region (REF≈0, ALT≈0) | ATAC: minimal change 2.8% |
| Visualization | |
Center for Precision Health
McWilliams School of Biomedical Informatics at UTHealth Houston
7000 Fannin Street, Suite 600, Houston, TX 77030
Email: Zhongming Zhao, Ph.D