Virus Integration Site Database Data Release 2.0

Details for VISDB ID: TVIS30015756

Genomic Region Visualization (IGV)

Basic Information
VISDB IDTVIS30015756
Fusion NameHIV-POU2F2 integration
ValidatedYes
Curated WayVISDB1.0
Methodligation mediated PCR
Wet AssayYes
Sample IDPT3
Sample NamePT3
Sample TypePBMC
Age52
Gender-
Disease Information
Disease NameHIV-infected disease
Disease AbbreviationHID
CancerNo
Literature
PubMed ID24968937
JournalScience
Published Year2014
Human Genome
Human Genome Version DescriptionGRCh37/hg19
Human Genome RefSeq AccessionGCF_000001405.13
Human Chromosomechr19
Cytogenetic Bandq13.2
Human Strand+
Human Integration Location TypeIntronic
Hg19 Start42616319
Hg19 End42616617
Hg38 Start42112167
Hg38 End42112167
Junction SequenceATGAACTGACCACACACCTCCAGGTGGGCAgttttgattggcctggtacccactgccccttcttcaacttattcaagcaacagaacccatctctttcaggggttacactttcccatcctcaagtcacgaggtccaggtagggctgaccttgccttctctggggtcgagggcaagggctcaaatctagccaGGGGACGTGtttttgtttgtttattttattgagacagagtctcactctgttgcccaggctggagt
Target Gene
Target GenePOU2F2
Nearby Gene-
Distance-
Virus Information
Virus NameHuman Immunodeficiency Virus
Virus Subtype Name-
Virus Genome AccessionNot given
TaxonomyID11676
Virus AbbreviationHIV
Virus Genome-
Virus Genome Length9719
Virus Breakpoint1-
Virus Breakpoint2-
Virus Gene Name-
Virus Region Type-
Integrated Virus Sequence-
ViMIC ID-