| Basic Information ▶ | |
| VISDB ID | TVIS30015776 |
|---|---|
| Fusion Name | HIV-NOSIP integration |
| Validated | Yes |
| Curated Way | VISDB1.0 |
| Method | ligation mediated PCR |
| Wet Assay | Yes |
| Sample ID | PT1 |
| Sample Name | PT1 |
| Sample Type | PBMC |
| Age | 47 |
| Gender | - |
| Disease Information ▶ | |
| Disease Name | HIV-infected disease |
| Disease Abbreviation | HID |
| Cancer | No |
| Literature ▶ | |
| PubMed ID | 24968937 |
| Journal | Science |
| Published Year | 2014 |
| Human Genome ▶ | |
| Human Genome Version Description | GRCh37/hg19 |
| Human Genome RefSeq Accession | GCF_000001405.13 |
| Human Chromosome | chr19 |
| Cytogenetic Band | q13.33 |
| Human Strand | - |
| Human Integration Location Type | Intronic |
| Hg19 Start | 50079055 |
| Hg19 End | 50079020 |
| Hg38 Start | 49575798 |
| Hg38 End | 49575798 |
| Junction Sequence | tctgacacggaatcacatataattgtcataggtca |
| Target Gene ▶ | |
| Target Gene | NOSIP |
| Nearby Gene | - |
| Distance | - |
| Virus Information ▶ | |
| Virus Name | Human Immunodeficiency Virus |
| Virus Subtype Name | - |
| Virus Genome Accession | Not given |
| TaxonomyID | 11676 |
| Virus Abbreviation | HIV |
| Virus Genome | - |
| Virus Genome Length | 9719 |
| Virus Breakpoint1 | - |
| Virus Breakpoint2 | - |
| Virus Gene Name | - |
| Virus Region Type | - |
| Integrated Virus Sequence | - |
| ViMIC ID | - |
| Predicted VIS Effect ▶ | |
| Gene Id | ENSG00000142546.15 |
| Gene Name | NOSIP |
| Region | intron |
| Impact | intronic_insertion |
| Transcript | Transcript 1: ENST00000596358.6, Transcript 2: ENST00000874165.1, Transcript 3: ENST00000598820.5, Transcript 4: ENST00000917077.1, Transcript 5: ENST00000339093.7, Transcript 6: ENST00000874170.1, Transcript 7: ENST00000874169.1, Transcript 8: ENST00000917076.1, Transcript 9: ENST00000874166.1, Transcript 10: ENST00000874164.1, Transcript 11: ENST00000917075.1, Transcript 12: ENST00000917074.1, Transcript 13: ENST00000874163.1, Transcript 14: ENST00000917073.1, Transcript 15: ENST00000601340.5, Transcript 16: ENST00000874172.1, Transcript 17: ENST00000874171.1, Transcript 18: ENST00000962184.1, Transcript 19: ENST00000874168.1, Transcript 20: ENST00000874167.1, Transcript 21: ENST00000874162.1, Transcript 22: ENST00000599537.5, Transcript 23: ENST00000594932.5, Transcript 24: ENST00000600019.5, Transcript 25: ENST00000598544.1, Transcript 26: ENST00000593345.1 |
| SpliceAI Score | |
| Delta Scores | Acceptor Gain: 0.000 | Acceptor Loss: 0.020 | Donor Gain: 0.000 | Donor Loss: 0.000 |
| Delta Score Max | 0.020 |
| Delta Position at Max | 1058 |
| Delta Score Flag | LOW |
| Gene | NOSIP |
| AlphaGenome Analysis | |
| Chromosome | chr19 |
Center for Precision Health
McWilliams School of Biomedical Informatics at UTHealth Houston
7000 Fannin Street, Suite 600, Houston, TX 77030
Email: Zhongming Zhao, Ph.D