Virus Integration Site Database Data Release 2.0

Details for VISDB ID: TVIS30016460

Basic Information ▶
VISDB ID	TVIS30016460
Fusion Name	HIV-chr6 integration
Validated	Yes
Curated Way	VISDB1.0
Method	ligation mediated PCR
Wet Assay	Yes
Sample ID	PT1
Sample Name	PT1
Sample Type	PBMC
Age	47
Gender	-
Disease Information ▶
Disease Name	HIV-infected disease
Disease Abbreviation	HID
Cancer	No
Literature ▶
PubMed ID	24968937
Journal	Science
Published Year	2014
Human Genome ▶
Human Genome Version Description	GRCh37/hg19
Human Genome RefSeq Accession	GCF_000001405.13
Human Chromosome	chr6
Cytogenetic Band	q21
Human Strand	+
Human Integration Location Type	Intergenic
Hg19 Start	110261318
Hg19 End	110261406
Hg38 Start	109940115
Hg38 End	109940115
Junction Sequence	gtctcttgtgtggtcaggaaagaaagaaCCAGATGTTACTGATGTTGGGGCCCCTGGTGCTCTAAGCATGCTGAAAACCTTGTGCTCT
Target Gene ▶
Target Gene	-
Nearby Gene	-
Distance	-
Virus Information ▶
Virus Name	Human Immunodeficiency Virus
Virus Subtype Name	-
Virus Genome Accession	Not given
TaxonomyID	11676
Virus Abbreviation	HIV
Virus Genome	-
Virus Genome Length	9719
Virus Breakpoint1	-
Virus Breakpoint2	-
Virus Gene Name	-
Virus Region Type	-
Integrated Virus Sequence	-
ViMIC ID	-
Predicted VIS Effect ▶
Region	intergenic
Impact	NA

AlphaGenome Analysis
Window	chr6:109874579-110005651
RNA-seq Change (±2kb)	Mean: -7.068809736665571e-06 \| Peak: 0.009674072265625
ATAC Change (±2kb)	Mean: 0.00411851005628705 \| Peak: 7.8359375
Interpretation	RNA-seq: no signal in region (REF≈0, ALT≈0) \| Splice sites: no signal in region (REF≈0, ALT≈0) \| ATAC: INCREASED 16.9% (REF=0.02, ALT=0.03)
Visualization