Virus Integration Site Database Data Release 2.0

Details for VISDB ID: TVIS30016832

Genomic Region Visualization (IGV)

Basic Information
VISDB IDTVIS30016832
Fusion NameHIV-ZBED4 integration
ValidatedNo
Curated WayViMIC
MethodMultiple-displacement amplificationsingle-genome sequencing (MDA-SGS)
Wet AssayYes
Sample ID-
Sample NameNot given
Sample TypePatient
Age-
Gender-
Disease Information
Disease NameHIV infection/AIDS
Disease AbbreviationAIDS
CancerNo
Literature
PubMed ID31776247
JournalPNAS
Published Year2019
Human Genome
Human Genome Version DescriptionGRCh37/hg19
Human Genome RefSeq AccessionGCF_000001405.13
Human Chromosomechr22
Cytogenetic Bandq13.33
Human Strand
Human Integration Location Typeintronic
Hg19 Start50275074
Hg19 End50275075
Hg38 Start49881426
Hg38 End49881427
Junction Sequence-
Target Gene
Target GeneZBED4
Nearby Gene-
Distance-
Virus Information
Virus NameHuman Immunodeficiency Virus
Virus Subtype Name-
Virus Genome Accession-
TaxonomyID11676
Virus AbbreviationHIV
Virus Genome-
Virus Genome Length-
Virus Breakpoint1-
Virus Breakpoint2-
Virus Gene Name-
Virus Region Type-
Integrated Virus Sequence-
ViMIC ID4100035