| Basic Information ▶ | |
| VISDB ID | TVIS30016945 |
|---|---|
| Fusion Name | HIV-PTRH2 integration |
| Validated | No |
| Curated Way | ViMIC |
| Method | Integration site sequencing (IS-seq) method |
| Wet Assay | Yes |
| Sample ID | - |
| Sample Name | IDFU-192 |
| Sample Type | Patient |
| Age | - |
| Gender | - |
| Disease Information ▶ | |
| Disease Name | HIV infection/AIDS |
| Disease Abbreviation | AIDS |
| Cancer | No |
| Literature ▶ | |
| PubMed ID | 31217357 |
| Journal | JCI Insight |
| Published Year | 2019 |
| Human Genome ▶ | |
| Human Genome Version Description | GRCh37/hg19 |
| Human Genome RefSeq Accession | GCF_000001405.13 |
| Human Chromosome | chr17 |
| Cytogenetic Band | q23.1 |
| Human Strand | |
| Human Integration Location Type | intronic |
| Hg19 Start | 57764861 |
| Hg19 End | 57764862 |
| Hg38 Start | 59687500 |
| Hg38 End | 59687501 |
| Junction Sequence | - |
| Target Gene ▶ | |
| Target Gene | PTRH2, CLTC |
| Nearby Gene | - |
| Distance | - |
| Virus Information ▶ | |
| Virus Name | Human Immunodeficiency Virus |
| Virus Subtype Name | - |
| Virus Genome Accession | - |
| TaxonomyID | 11676 |
| Virus Abbreviation | HIV |
| Virus Genome | - |
| Virus Genome Length | - |
| Virus Breakpoint1 | - |
| Virus Breakpoint2 | - |
| Virus Gene Name | - |
| Virus Region Type | - |
| Integrated Virus Sequence | - |
| ViMIC ID | 4100148 |
Center for Precision Health
McWilliams School of Biomedical Informatics at UTHealth Houston
7000 Fannin Street, Suite 600, Houston, TX 77030
Email: Zhongming Zhao, Ph.D