| Basic Information ▶ | |
| VISDB ID | TVIS30017041 |
|---|---|
| Fusion Name | HIV-MATR3 integration |
| Validated | No |
| Curated Way | ViMIC |
| Method | Integration site sequencing (IS-seq) method |
| Wet Assay | Yes |
| Sample ID | - |
| Sample Name | Not given |
| Sample Type | CD4+ T cells |
| Age | - |
| Gender | - |
| Disease Information ▶ | |
| Disease Name | HIV infection/AIDS |
| Disease Abbreviation | AIDS |
| Cancer | No |
| Literature ▶ | |
| PubMed ID | 33016926 |
| Journal | Journal of clinical Investigation |
| Published Year | 2020 |
| Human Genome ▶ | |
| Human Genome Version Description | GRCh37/hg19 |
| Human Genome RefSeq Accession | GCF_000001405.13 |
| Human Chromosome | chr5 |
| Cytogenetic Band | q31.2 |
| Human Strand | |
| Human Integration Location Type | intronic |
| Hg19 Start | 138660320 |
| Hg19 End | 138660321 |
| Hg38 Start | 139324631 |
| Hg38 End | 139324632 |
| Junction Sequence | - |
| Target Gene ▶ | |
| Target Gene | MATR3, MATR3 |
| Nearby Gene | - |
| Distance | - |
| Virus Information ▶ | |
| Virus Name | Human Immunodeficiency Virus |
| Virus Subtype Name | - |
| Virus Genome Accession | - |
| TaxonomyID | 11676 |
| Virus Abbreviation | HIV |
| Virus Genome | - |
| Virus Genome Length | - |
| Virus Breakpoint1 | - |
| Virus Breakpoint2 | - |
| Virus Gene Name | - |
| Virus Region Type | - |
| Integrated Virus Sequence | - |
| ViMIC ID | 4300003 |
Center for Precision Health
McWilliams School of Biomedical Informatics at UTHealth Houston
7000 Fannin Street, Suite 600, Houston, TX 77030
Email: Zhongming Zhao, Ph.D