| Basic Information ▶ | |
| VISDB ID | TVIS30017087 |
|---|---|
| Fusion Name | HIV-LSS integration |
| Validated | No |
| Curated Way | ViMIC |
| Method | Integration site sequencing (IS-seq) method |
| Wet Assay | Yes |
| Sample ID | - |
| Sample Name | 2 |
| Sample Type | HIV Infected |
| Age | - |
| Gender | - |
| Disease Information ▶ | |
| Disease Name | HIV infection/AIDS |
| Disease Abbreviation | AIDS |
| Cancer | No |
| Literature ▶ | |
| PubMed ID | 33318172 |
| Journal | PNAS |
| Published Year | 2020 |
| Human Genome ▶ | |
| Human Genome Version Description | GRCh38/hg38 |
| Human Genome RefSeq Accession | GCF_000001405.40 |
| Human Chromosome | chr21 |
| Cytogenetic Band | q22.3 |
| Human Strand | |
| Human Integration Location Type | intronic |
| Hg19 Start | - |
| Hg19 End | - |
| Hg38 Start | 46195808 |
| Hg38 End | 46195809 |
| Junction Sequence | - |
| Target Gene ▶ | |
| Target Gene | LSS |
| Nearby Gene | - |
| Distance | - |
| Virus Information ▶ | |
| Virus Name | Human Immunodeficiency Virus |
| Virus Subtype Name | - |
| Virus Genome Accession | - |
| TaxonomyID | 11676 |
| Virus Abbreviation | HIV |
| Virus Genome | - |
| Virus Genome Length | - |
| Virus Breakpoint1 | - |
| Virus Breakpoint2 | - |
| Virus Gene Name | - |
| Virus Region Type | - |
| Integrated Virus Sequence | - |
| ViMIC ID | 4300049 |
Center for Precision Health
McWilliams School of Biomedical Informatics at UTHealth Houston
7000 Fannin Street, Suite 600, Houston, TX 77030
Email: Zhongming Zhao, Ph.D