| Basic Information ▶ | |
| VISDB ID | TVIS30017332 |
|---|---|
| Fusion Name | HIV-STAT5B integration |
| Validated | No |
| Curated Way | ViMIC |
| Method | Pooled CRISPR Inverse PCR sequencing (PCIP-seq) |
| Wet Assay | Yes |
| Sample ID | - |
| Sample Name | 6042 |
| Sample Type | HIV Infected |
| Age | - |
| Gender | - |
| Disease Information ▶ | |
| Disease Name | HIV infection/AIDS |
| Disease Abbreviation | AIDS |
| Cancer | No |
| Literature ▶ | |
| PubMed ID | 33823910 |
| Journal | Genome Biology |
| Published Year | 2021 |
| Human Genome ▶ | |
| Human Genome Version Description | GRCh38/hg38 |
| Human Genome RefSeq Accession | GCF_000001405.40 |
| Human Chromosome | chr17 |
| Cytogenetic Band | q21.2 |
| Human Strand | |
| Human Integration Location Type | intronic |
| Hg19 Start | - |
| Hg19 End | - |
| Hg38 Start | 42265627 |
| Hg38 End | 42265628 |
| Junction Sequence | - |
| Target Gene ▶ | |
| Target Gene | STAT5B |
| Nearby Gene | - |
| Distance | - |
| Virus Information ▶ | |
| Virus Name | Human Immunodeficiency Virus |
| Virus Subtype Name | - |
| Virus Genome Accession | M38431.1 |
| TaxonomyID | 11676 |
| Virus Abbreviation | HIV |
| Virus Genome | Human immunodeficiency virus type 1, isolate NY5, complete genome. Infectious single LTR molecular proviral genome |
| Virus Genome Length | 9022 bp |
| Virus Breakpoint1 | - |
| Virus Breakpoint2 | - |
| Virus Gene Name | - |
| Virus Region Type | - |
| Integrated Virus Sequence | - |
| ViMIC ID | 4500191 |
Center for Precision Health
McWilliams School of Biomedical Informatics at UTHealth Houston
7000 Fannin Street, Suite 600, Houston, TX 77030
Email: Zhongming Zhao, Ph.D