| Basic Information ▶ | |
| VISDB ID | TVIS30017463 |
|---|---|
| Fusion Name | HIV-SAMD4A-AS1 integration |
| Validated | No |
| Curated Way | Curated |
| Method | Non-restrictive linear amplification-mediated PCR (nrLAM-PCR), followed by InStAP analysis |
| Wet Assay | Yes |
| Sample ID | 3 |
| Sample Name | - |
| Sample Type | Tumor |
| Age | - |
| Gender | - |
| Disease Information ▶ | |
| Disease Name | - |
| Disease Abbreviation | - |
| Cancer | - |
| Literature ▶ | |
| PubMed ID | 33784259 |
| Journal | JCI Insight |
| Published Year | 2021 |
| Human Genome ▶ | |
| Human Genome Version Description | GRCh37/hg19 |
| Human Genome RefSeq Accession | GCF_000001405.13 |
| Human Chromosome | chr14 |
| Cytogenetic Band | q22.2 |
| Human Strand | - |
| Human Integration Location Type | intronic |
| Hg19 Start | 55177824 |
| Hg19 End | 55177878 |
| Hg38 Start | 54711106 |
| Hg38 End | 54711160 |
| Junction Sequence | - |
| Target Gene ▶ | |
| Target Gene | SAMD4A-AS1, SAMD4A |
| Nearby Gene | - |
| Distance | - |
| Virus Information ▶ | |
| Virus Name | Human Immunodeficiency Virus |
| Virus Subtype Name | HIV-1 type B |
| Virus Genome Accession | - |
| TaxonomyID | 11676 |
| Virus Abbreviation | HIV |
| Virus Genome | - |
| Virus Genome Length | - |
| Virus Breakpoint1 | - |
| Virus Breakpoint2 | - |
| Virus Gene Name | - |
| Virus Region Type | - |
| Integrated Virus Sequence | - |
| ViMIC ID | - |
Center for Precision Health
McWilliams School of Biomedical Informatics at UTHealth Houston
7000 Fannin Street, Suite 600, Houston, TX 77030
Email: Zhongming Zhao, Ph.D