Virus Integration Site Database Data Release 2.0

Details for VISDB ID: TVIS30017988

Genomic Region Visualization (IGV)

Basic Information
VISDB IDTVIS30017988
Fusion NameHIV-PDE4B integration
ValidatedNo
Curated WayCurated
MethodLinker-mediated PCR (LM-PCR) and high-throughput sequencing
Wet AssayYes
Sample ID-
Sample NameKNI
Sample TypeTumor
Age-
Gender-
Disease Information
Disease Name-
Disease Abbreviation-
Cancer-
Literature
PubMed ID33844021
JournalThe Journal of Infectious Diseases
Published Year2022
Human Genome
Human Genome Version DescriptionGRCh37/hg19
Human Genome RefSeq AccessionGCF_000001405.13
Human Chromosomechr1
Cytogenetic Bandp31.3
Human Strand-
Human Integration Location Typeintronic
Hg19 Start66807757
Hg19 End66807757
Hg38 Start66342074
Hg38 End66342074
Junction Sequence-
Target Gene
Target GenePDE4B
Nearby Gene-
Distance-
Virus Information
Virus NameHuman Immunodeficiency Virus
Virus Subtype Name-
Virus Genome Accession-
TaxonomyID11676
Virus AbbreviationHIV
Virus Genome-
Virus Genome Length-
Virus Breakpoint1-
Virus Breakpoint2-
Virus Gene Name-
Virus Region Type-
Integrated Virus Sequence-
ViMIC ID-