Virus Integration Site Database Data Release 2.0

Details for VISDB ID: TVIS30018125

Genomic Region Visualization (IGV)

Basic Information
VISDB IDTVIS30018125
Fusion NameHIV-ZMYM2 integration
ValidatedNo
Curated WayCurated
MethodLinker-mediated PCR (LM-PCR) and high-throughput sequencing
Wet AssayYes
Sample ID-
Sample NameKYAG
Sample TypeTumor
Age-
Gender-
Disease Information
Disease Name-
Disease Abbreviation-
Cancer-
Literature
PubMed ID33844021
JournalThe Journal of Infectious Diseases
Published Year2022
Human Genome
Human Genome Version DescriptionGRCh37/hg19
Human Genome RefSeq AccessionGCF_000001405.13
Human Chromosomechr13
Cytogenetic Bandq12.11
Human Strand+
Human Integration Location Typeintronic
Hg19 Start20640340
Hg19 End20640340
Hg38 Start20066200
Hg38 End20066200
Junction Sequence-
Target Gene
Target GeneZMYM2
Nearby Gene-
Distance-
Virus Information
Virus NameHuman Immunodeficiency Virus
Virus Subtype Name-
Virus Genome Accession-
TaxonomyID11676
Virus AbbreviationHIV
Virus Genome-
Virus Genome Length-
Virus Breakpoint1-
Virus Breakpoint2-
Virus Gene Name-
Virus Region Type-
Integrated Virus Sequence-
ViMIC ID-