| Basic Information ▶ | |
| VISDB ID | TVIS30019525 |
|---|---|
| Fusion Name | HIV-SPECC1L integration |
| Validated | No |
| Curated Way | Curated |
| Method | Integration Site Loop Amplification (ISLA) and next-generation sequencing |
| Wet Assay | Yes |
| Sample ID | - |
| Sample Name | P5 |
| Sample Type | Patient |
| Age | 54 yrs |
| Gender | Male |
| Disease Information ▶ | |
| Disease Name | - |
| Disease Abbreviation | - |
| Cancer | - |
| Literature ▶ | |
| PubMed ID | 35026153 |
| Journal | Cell |
| Published Year | 2024 |
| Human Genome ▶ | |
| Human Genome Version Description | GRCh38/hg38 |
| Human Genome RefSeq Accession | GCF_000001405.40 |
| Human Chromosome | chr22 |
| Cytogenetic Band | q11.23 |
| Human Strand | + |
| Human Integration Location Type | intronic |
| Hg19 Start | - |
| Hg19 End | - |
| Hg38 Start | 24347315 |
| Hg38 End | 24347315 |
| Junction Sequence | - |
| Target Gene ▶ | |
| Target Gene | SPECC1L, SPECC1L-ADORA2A, ENSG00000299949 |
| Nearby Gene | - |
| Distance | - |
| Virus Information ▶ | |
| Virus Name | Human Immunodeficiency Virus |
| Virus Subtype Name | - |
| Virus Genome Accession | HXB2 |
| TaxonomyID | 11676 |
| Virus Abbreviation | HIV |
| Virus Genome | Human immunodeficiency virus type 1 (HXB2), complete genome; HIV1/HTLV-III/LAV reference genome |
| Virus Genome Length | 9719 bp |
| Virus Breakpoint1 | - |
| Virus Breakpoint2 | - |
| Virus Gene Name | - |
| Virus Region Type | - |
| Integrated Virus Sequence | - |
| ViMIC ID | - |
Center for Precision Health
McWilliams School of Biomedical Informatics at UTHealth Houston
7000 Fannin Street, Suite 600, Houston, TX 77030
Email: Zhongming Zhao, Ph.D