Virus Integration Site Database Data Release 2.0

Details for VISDB ID: TVIS42000380

Genomic Region Visualization (IGV)

Basic Information
VISDB IDTVIS42000380
Fusion NameEBV-ZMYM4 integration
ValidatedNo
Curated WayVISDB1.0
MethodWhole-genome sequencing
Wet AssayNo
Sample IDRaji
Sample NameRaji
Sample TypeCell line
Age-
Gender-
Disease Information
Disease NameB-cell lymphoma
Disease AbbreviationBCL
CancerYes
Literature
PubMed ID26819646
JournalVirus Research
Published Year2005
Human Genome
Human Genome Version DescriptionGRCh37/hg19
Human Genome RefSeq AccessionGCF_000001405.13
Human Chromosomechr1
Cytogenetic Bandp34.3
Human Strand+
Human Integration Location TypeIntronic
Hg19 Start35851517
Hg19 End35851517
Hg38 Start35385916
Hg38 End35385916
Junction Sequence-
Target Gene
Target GeneZMYM4
Nearby Gene-
Distance-
Virus Information
Virus NameEpstein-Barr Virus
Virus Subtype Name-
Virus Genome AccessionNC007605
TaxonomyID10376
Virus AbbreviationEBV
Virus GenomeHuman gammaherpesvirus 4, complete genome
Virus Genome Length171823
Virus Breakpoint143141
Virus Breakpoint2-
Virus Gene Name-
Virus Region Type-
Integrated Virus SequenceAAGATACTAAAGAAATAACTGAGGTGAGTGTGGGAAGATGGGAATACTATGTGTTATGTTAACGGGTGAGAGCCTATACTGCAGCCCAGACTCGGGGGGA| |GGAGGAAATGGTAAGAGTTATACTCTACTTATCTTTTTTGACACTACATTTAACTGTTATGTAACAATGTTTGCTTATTTTCATGTTCAATAAACGCTAT
ViMIC ID-