Virus Integration Site Database Data Release 2.0

Details for VISDB ID: TVIS42000790

Genomic Region Visualization (IGV)

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Basic Information
VISDB IDTVIS42000790
Fusion NameEBV-LOC105378036 integration
ValidatedNo
Curated WayVISDB1.0
MethodWhole-genome sequencing
Wet AssayNo
Sample IDRaji
Sample NameRaji
Sample TypeCell line
Age-
Gender-
Disease Information
Disease NameB-cell lymphoma
Disease AbbreviationBCL
CancerYes
Literature
PubMed ID26819646
JournalVirus Research
Published Year2005
Human Genome
Human Genome Version DescriptionGRCh37/hg19
Human Genome RefSeq AccessionGCF_000001405.13
Human Chromosomechr6
Cytogenetic Bandq24.2
Human Strand+
Human Integration Location TypeIntronic
Hg19 Start144446414
Hg19 End144446414
Hg38 Start144125277
Hg38 End144125277
Junction Sequence-
Target Gene
Target GeneENSG00000304931
Nearby Gene-
Distance-
Virus Information
Virus NameEpstein-Barr Virus
Virus Subtype Name-
Virus Genome AccessionNC007605
TaxonomyID10376
Virus AbbreviationEBV
Virus GenomeHuman gammaherpesvirus 4, complete genome
Virus Genome Length171823
Virus Breakpoint164683
Virus Breakpoint2-
Virus Gene Name-
Virus Region Type-
Integrated Virus SequenceGATTACTACTTTGAGCACCTAACCTCCCAGACGGTGTGCTGCTCCACGCCCTTTATGCGCTTTGCCGGGGTGGAAAACTCCACTCTGGCCAGCTGCATCC| |TCACCACCCCCGACCTCAGCTCCGAGTGGGACGTGACCCAGGCCCTCTATAGGCACCTGGGGCGCTACCTCTTTCAGCGAGCCGGGGTGGGTGTAGGGGT
ViMIC ID-