Virus Integration Site Database Data Release 2.0

Details for VISDB ID: TVIS42000943

Genomic Region Visualization (IGV)

Basic Information
VISDB IDTVIS42000943
Fusion NameEBV-chr20:q13.32 integration
ValidatedYes
Curated WayVISDB1.0
MethodSanger sequencing
Wet AssayYes
Sample IDC666-1
Sample NameC666-1
Sample TypeCell line
Age-
Gender-
Disease Information
Disease NameNasopharyngeal carcinoma
Disease AbbreviationNPC
CancerYes
Literature
PubMed ID30867819
Journal Theranostics
Published Year2019
Human Genome
Human Genome Version DescriptionGRCh37/hg19
Human Genome RefSeq AccessionGCF_000001405.13
Human Chromosomechr20
Cytogenetic Bandq13.32
Human Strand+
Human Integration Location TypeIntergenic
Hg19 Start57967350
Hg19 End57967350
Hg38 Start59392295
Hg38 End59392295
Junction Sequence-
Target Gene
Target Gene-
Nearby GeneENSG00000286309
Distance1671
Virus Information
Virus NameEpstein-Barr Virus
Virus Subtype Name-
Virus Genome AccessionNC007605
TaxonomyID10376
Virus AbbreviationEBV
Virus GenomeHuman gammaherpesvirus 4, complete genome
Virus Genome Length171823
Virus Breakpoint1121107
Virus Breakpoint2-
Virus Gene Name-
Virus Region Type-
Integrated Virus SequenceTCAAATCCATCTTTATTGACAATTATCAAAAAACCACCTTATTTCCAAACTTTAATATTCTTCGTACCGGCGCCACCTCTTCAATTATATAGTGTCCGTA| |ATGGATGGGGGCGTGGGTCTGTTTGACAGACATAAACTCATCGATGAGTGCCCGGGAGGAGGCTGAGAGTGCGGGGAATGCCTCCTGCAGAAAGCTGCAG
ViMIC ID-