Virus Integration Site Database Data Release 2.0

Details for VISDB ID: TVIS42000947

Genomic Region Visualization (IGV)

Basic Information
VISDB IDTVIS42000947
Fusion NameEBV-MTCO2P12 integration
ValidatedNo
Curated WayVISDB1.0
MethodGenCap Enrichment+Illumina HiSeq 2000
Wet AssayNo
Sample IDGCT007
Sample NameGCT007
Sample TypeTumor
Age-
Gender-
Disease Information
Disease NameGastric carcinoma
Disease AbbreviationGC
CancerYes
Literature
PubMed ID30867819
JournalJournal of Virology
Published Year2015
Human Genome
Human Genome Version DescriptionGRCh37/hg19
Human Genome RefSeq AccessionGCF_000001405.13
Human Chromosomechr1
Cytogenetic Bandp36.33
Human Strand+
Human Integration Location Typeupstream
Hg19 Start568265
Hg19 End568265
Hg38 Start632885
Hg38 End632885
Junction Sequence-
Target Gene
Target GeneMTCO2P12, ENSG00000293331, LINC00115
Nearby Gene-
Distance-
Virus Information
Virus NameEpstein-Barr Virus
Virus Subtype Name-
Virus Genome AccessionNC007605
TaxonomyID10376
Virus AbbreviationEBV
Virus GenomeHuman gammaherpesvirus 4, complete genome
Virus Genome Length171823
Virus Breakpoint1169253
Virus Breakpoint2-
Virus Gene Name-
Virus Region Type-
Integrated Virus SequenceCCGGAGGCAGTACGGGTACAGATTTCCCGAAAGCGGCGGTGTGTGTGTGCATGTAAGCGTAGAAAGGGGAAGTAGAAAGCGTGTGTTTGTGTTAGAAAAG| |CGGGTCCCCGGGGGGCAAGCTGTGGGAATGCGGTGGCCAAGTGCAACAGGAAATGGAAAGGCAGTGCGGCAATCAGAAGGGGGAGTGCGTAGTGTTGTGG
ViMIC ID-