Virus Integration Site Database Data Release 2.0

Details for VISDB ID: TVIS42001071

Genomic Region Visualization (IGV)

Basic Information
VISDB IDTVIS42001071
Fusion NameEBV-chr7:q21.11 integration
ValidatedNo
Curated WayVISDB1.0
MethodGenCap Enrichment+Illumina HiSeq 2000
Wet AssayNo
Sample IDGCT015
Sample NameGCT015
Sample TypeTumor
Age-
Gender-
Disease Information
Disease NameGastric carcinoma
Disease AbbreviationGC
CancerYes
Literature
PubMed ID30867819
JournalJournal of Virology
Published Year2015
Human Genome
Human Genome Version DescriptionGRCh37/hg19
Human Genome RefSeq AccessionGCF_000001405.13
Human Chromosomechr7
Cytogenetic Bandq21.11
Human Strand+
Human Integration Location TypeIntergenic
Hg19 Start79305553
Hg19 End79305553
Hg38 Start79676237
Hg38 End79676237
Junction Sequence-
Target Gene
Target GeneENSG00000287488
Nearby Gene-
Distance-
Virus Information
Virus NameEpstein-Barr Virus
Virus Subtype Name-
Virus Genome AccessionNC007605
TaxonomyID10376
Virus AbbreviationEBV
Virus GenomeHuman gammaherpesvirus 4, complete genome
Virus Genome Length171823
Virus Breakpoint166841
Virus Breakpoint2-
Virus Gene Name-
Virus Region Type-
Integrated Virus SequenceAGAGGGACTTGGAGTTTTACAAGTTCCTCTTTACGTTCCTGGCCATGGCCGAGAAGCTTGTGAACTTTAACATTGATGAACTGGTCACCAGCTTCGAGAG| |CCACGACATTGATCACTACTACACCGAGCAGAAGGCCATGGAGAACGTCCACGGGGAGACTTATGCTAACATTTTAAACATGCTCTTTGATGGGGACAGG
ViMIC ID-