Virus Integration Site Database Data Release 2.0

Details for VISDB ID: TVIS42001115

Genomic Region Visualization (IGV)

Basic Information
VISDB IDTVIS42001115
Fusion NameEBV-chr11:q23.3 integration
ValidatedNo
Curated WayVISDB1.0
MethodGenCap Enrichment+Illumina HiSeq 2000
Wet AssayNo
Sample IDNPCT017
Sample NameNPCT017
Sample TypeTumor
Age-
Gender-
Disease Information
Disease NameNasopharyngeal carcinoma
Disease AbbreviationNPC
CancerYes
Literature
PubMed ID30867819
JournalJournal of Virology
Published Year2015
Human Genome
Human Genome Version DescriptionGRCh37/hg19
Human Genome RefSeq AccessionGCF_000001405.13
Human Chromosomechr11
Cytogenetic Bandq23.3
Human Strand+
Human Integration Location TypeIntergenic
Hg19 Start116064662
Hg19 End116064662
Hg38 Start116193945
Hg38 End116193945
Junction Sequence-
Target Gene
Target Gene-
Nearby Gene-
Distance-
Virus Information
Virus NameEpstein-Barr Virus
Virus Subtype Name-
Virus Genome AccessionNC007605
TaxonomyID10376
Virus AbbreviationEBV
Virus GenomeHuman gammaherpesvirus 4, complete genome
Virus Genome Length171823
Virus Breakpoint199594
Virus Breakpoint2-
Virus Gene Name-
Virus Region Type-
Integrated Virus SequenceTGTAAATAAAATGTCATAACCTGGAGTCTGCATGTCTGTTGTTTTATTCAGTAAACCAGTAGTGCGCGTGAGTTCTTTAGGGCATCCACGATGTAGCCGC| |TCGCGGGGTTCCCCTCCCCAGTGATCATCTCGGATAGGGGATTCCTGTCCATGACCACGCAATTAGAGTGCCGGGCCCGGGACAGCGCCACATACACATG
ViMIC ID-