Virus Integration Site Database Data Release 2.0

Details for VISDB ID: TVIS42001140

Genomic Region Visualization (IGV)

Basic Information
VISDB IDTVIS42001140
Fusion NameEBV-chr2:p13 integration
ValidatedYes
Curated WayVISDB1.0
MethodReal-time PC
Wet AssayYes
Sample IDNAB-2
Sample NameNAB-2
Sample TypeCell line
Age-
Gender-
Disease Information
Disease NameB-cell lymphoma
Disease AbbreviationBCL
CancerYes
Literature
PubMed ID15241441
Journal Journal of Cancer
Published Year2016
Human Genome
Human Genome Version DescriptionAC009970
Human Genome RefSeq AccessionAC009970
Human Chromosomechr2
Cytogenetic Bandp13
Human Strand
Human Integration Location Typeintergenic
Hg19 Start113504
Hg19 End-
Hg38 Start-
Hg38 End-
Junction Sequence-
Target Gene
Target Gene-
Nearby Gene-
Distance-
Virus Information
Virus NameEpstein-Barr Virus
Virus Subtype Name-
Virus Genome AccessionV01555
TaxonomyID10376
Virus AbbreviationEBV
Virus GenomeEpstein-Barr virus (EBV) genome, strain B95-8
Virus Genome Length172281
Virus Breakpoint1172250
Virus Breakpoint2-
Virus Gene Name-
Virus Region Type-
Integrated Virus SequenceCGTGACCAAGGGGCCCGTGGGTGACACAGGCAACCCTGACAAAGGCCCCCCAGGAAAGACCCCCGGGGGGCATCGGGGGGGGTGTTGGCGGGGGCATGGG| |GGGGTCGGATTTCGCCCTTATTGCCCTGTTT
ViMIC ID-