| Basic Information ▶ | |
| VISDB ID | TVIS42001159 |
|---|---|
| Fusion Name | EBV-HLA-A integration |
| Validated | No |
| Curated Way | ViMIC |
| Method | RNA sequencing, followed bioinformatics analysis using VICaller |
| Wet Assay | No |
| Sample ID | SRR1071403 |
| Sample Name | EBV-Tf Cells |
| Sample Type | Tumor |
| Age | - |
| Gender | - |
| Disease Information ▶ | |
| Disease Name | Gastric carcinoma;Nasopharyngeal carcinoma |
| Disease Abbreviation | GC; NPC |
| Cancer | Yes |
| Literature ▶ | |
| PubMed ID | 31481499 |
| Journal | Cancer Research |
| Published Year | 2019 |
| Human Genome ▶ | |
| Human Genome Version Description | GRCh37/hg19 |
| Human Genome RefSeq Accession | GCF_000001405.13 |
| Human Chromosome | chr6 |
| Cytogenetic Band | p22.1 |
| Human Strand | |
| Human Integration Location Type | exonic |
| Hg19 Start | 29910000 |
| Hg19 End | 29914000 |
| Hg38 Start | 29942223 |
| Hg38 End | 29946223 |
| Junction Sequence | - |
| Target Gene ▶ | |
| Target Gene | HLA-A, ENSG00000227766, POLR1HASP |
| Nearby Gene | - |
| Distance | - |
| Virus Information ▶ | |
| Virus Name | Epstein-Barr Virus |
| Virus Subtype Name | - |
| Virus Genome Accession | Not given |
| TaxonomyID | 10376 |
| Virus Abbreviation | EBV |
| Virus Genome | - |
| Virus Genome Length | - |
| Virus Breakpoint1 | - |
| Virus Breakpoint2 | - |
| Virus Gene Name | - |
| Virus Region Type | - |
| Integrated Virus Sequence | - |
| ViMIC ID | 3200010 |
Center for Precision Health
McWilliams School of Biomedical Informatics at UTHealth Houston
7000 Fannin Street, Suite 600, Houston, TX 77030
Email: Zhongming Zhao, Ph.D