Virus Integration Site Database Data Release 2.0

Details for VISDB ID: TVIS42001502

Basic Information ▶
VISDB ID	TVIS42001502
Fusion Name	EBV-chr3:93470550 integration
Validated	No
Curated Way	Curated
Method	EBV capture sequencing, followed by Viral Integration Pathway Analysis (VIPA) pipeline
Wet Assay	No
Sample ID	SAMEA104127344.3
Sample Name	ERP001026
Sample Type	Tumor
Age	-
Gender	-
Disease Information ▶
Disease Name	Multiple
Disease Abbreviation	-
Cancer	Yes
Literature ▶
PubMed ID	35968887
Journal	Clinical and Translational Medicine
Published Year	2022
Human Genome ▶
Human Genome Version Description	GRCh38/hg38
Human Genome RefSeq Accession	GCF_000001405.40
Human Chromosome	chr3
Cytogenetic Band	q11.1
Human Strand	+
Human Integration Location Type	intergenic
Hg19 Start	-
Hg19 End	-
Hg38 Start	93470550
Hg38 End	93470550
Junction Sequence	-gncnnngnnggnnn-nntn-cggnng-ggaagncntcnntgaagcGctcg-Cntg-nGC-tATggcnngncnccaGngctatnTgCttgtctcCAcaGnnCcccTcggc-actcaactttgtcaacgacctggtantTtATGTACACTATAGAATATATATCTGGTGTACTTTCATATTTTATGTACAGAATAAAATATATATTTGATGTACTTTCATATTTTATGTACAGTATATAATACATGCTTTGGGTACTTTGATATTTTTTGTACAGTATAagctgctgagcatggccccccaggaggcaacgctggaccaggcggtcgtttcaaatgctgtGAATATATACCTTGGGnnnnTnnnTttggagcgagaagacagggatgcnTnn-T
Target Gene ▶
Target Gene	-
Nearby Gene	-
Distance	-
Virus Information ▶
Virus Name	Epstein-Barr Virus
Virus Subtype Name	-
Virus Genome Accession	NC_007605.1
TaxonomyID	10376
Virus Abbreviation	EBV
Virus Genome	Human gammaherpesvirus 4, complete genome
Virus Genome Length	171823 bp
Virus Breakpoint1	129297
Virus Breakpoint2	-
Virus Gene Name	BXLF1,BXLF2
Virus Region Type	-
Integrated Virus Sequence	-
ViMIC ID	-