| Basic Information ▶ | |
| VISDB ID | TVIS42001705 |
|---|---|
| Fusion Name | EBV-SCARA5 integration |
| Validated | No |
| Curated Way | Curated |
| Method | Whole exome and RNA sequencing |
| Wet Assay | Yes |
| Sample ID | - |
| Sample Name | P31 |
| Sample Type | Tumor |
| Age | 48 |
| Gender | Male |
| Disease Information ▶ | |
| Disease Name | Primary pulmonary lymphoepithelial carcinoma (pLEC) |
| Disease Abbreviation | pLEC |
| Cancer | Yes |
| Literature ▶ | |
| PubMed ID | 39815193 |
| Journal | BMC Cancer |
| Published Year | 2025 |
| Human Genome ▶ | |
| Human Genome Version Description | GRCh37/hg19 |
| Human Genome RefSeq Accession | GCF_000001405.13 |
| Human Chromosome | chr8 |
| Cytogenetic Band | p21.1 |
| Human Strand | |
| Human Integration Location Type | intronic |
| Hg19 Start | 27776652 |
| Hg19 End | 27776652 |
| Hg38 Start | 27919135 |
| Hg38 End | 27919135 |
| Junction Sequence | - |
| Target Gene ▶ | |
| Target Gene | SCARA5 |
| Nearby Gene | - |
| Distance | - |
| Virus Information ▶ | |
| Virus Name | Epstein-Barr Virus |
| Virus Subtype Name | - |
| Virus Genome Accession | NC_009334.1 |
| TaxonomyID | 10376 |
| Virus Abbreviation | EBV |
| Virus Genome | Human herpesvirus 4, complete genome |
| Virus Genome Length | 172764 bp |
| Virus Breakpoint1 | 76651 |
| Virus Breakpoint2 | - |
| Virus Gene Name | HHV4tp2_gp25 |
| Virus Region Type | - |
| Integrated Virus Sequence | - |
| ViMIC ID | - |
Center for Precision Health
McWilliams School of Biomedical Informatics at UTHealth Houston
7000 Fannin Street, Suite 600, Houston, TX 77030
Email: Zhongming Zhao, Ph.D