Virus Integration Site Database Data Release 2.0

Details for VISDB ID: TVIS43000153

Genomic Region Visualization (IGV)

Basic Information
VISDB IDTVIS43000153
Fusion NameMCV-chr4:58486053 integration
ValidatedNo
Curated WayViMIC
MethodWhole-exome sequencing
Wet AssayNo
Sample ID-
Sample Name-
Sample TypeTumor
Age-
Gender-
Disease Information
Disease NameMerkel cell carcinoma
Disease AbbreviationMCC
CancerYes
Literature
PubMed ID32878339
JournalViruses
Published Year2020
Human Genome
Human Genome Version DescriptionGRCh38/hg38
Human Genome RefSeq AccessionGCF_000001405.40
Human Chromosomechr4
Cytogenetic Bandq12
Human Strand
Human Integration Location Typeintergenic
Hg19 Start-
Hg19 End-
Hg38 Start58486053
Hg38 End58486054
Junction Sequence-
Target Gene
Target Gene-
Nearby Gene-
Distance-
Virus Information
Virus NameMerkel cell polyomavirus
Virus Subtype Name-
Virus Genome AccessionKX781279.1
TaxonomyID493803
Virus AbbreviationMCV
Virus GenomeMerkel cell polyomavirus isolate DyskA, complete genome
Virus Genome Length5387 bp
Virus Breakpoint1-
Virus Breakpoint2-
Virus Gene Name-
Virus Region Type-
Integrated Virus Sequence-
ViMIC ID7300044