Virus Integration Site Database Data Release 2.0

Details for VISDB ID: TVIS44000021

Genomic Region Visualization (IGV)

Basic Information
VISDB IDTVIS44000021
Fusion NameHTLV-1-TALDO1 integration
ValidatedNo
Curated WayVISDB1.0
MethodHigh throughput sequenicng
Wet AssayNo
Sample IDATL7-D
Sample NameATL7-D
Sample TypeNontumor
Age59
Gender-
Disease Information
Disease NameAdult T-cell leukemia
Disease AbbreviationATL
CancerYes
Literature
PubMed ID28811663
JournalLeukemia
Published Year2017
Human Genome
Human Genome Version DescriptionGRCh37/hg19
Human Genome RefSeq AccessionGCF_000001405.13
Human Chromosomechr11
Cytogenetic Bandp15.5
Human Strand-
Human Integration Location TypeExonic
Hg19 Start755987
Hg19 End755987
Hg38 Start755987
Hg38 End755987
Junction Sequence-
Target Gene
Target GeneTALDO1
Nearby Gene-
Distance-
Virus Information
Virus NameHuman T-lymphotropic Virus
Virus Subtype Name-
Virus Genome AccessionNot given
TaxonomyID11908
Virus AbbreviationHTLV-1
Virus Genome-
Virus Genome Length9046
Virus Breakpoint1-
Virus Breakpoint2-
Virus Gene Name-
Virus Region Type-
Integrated Virus Sequence-
ViMIC ID-