Virus Integration Site Database Data Release 2.0

Details for VISDB ID: TVIS44001967

Genomic Region Visualization (IGV)

Basic Information
VISDB IDTVIS44001967
Fusion NameHTLV-1-chr6 integration
ValidatedNo
Curated WayVISDB1.0
MethodHigh throughput sequenicng
Wet AssayNo
Sample IDATL11-CR3
Sample NameATL11-CR3
Sample TypeNontumor
Age27
Gender-
Disease Information
Disease NameAdult T-cell leukemia
Disease AbbreviationATL
CancerYes
Literature
PubMed ID28811663
JournalLeukemia
Published Year2017
Human Genome
Human Genome Version DescriptionGRCh37/hg19
Human Genome RefSeq AccessionGCF_000001405.13
Human Chromosomechr6
Cytogenetic Bandq22.1
Human Strand+
Human Integration Location TypeIntergenic
Hg19 Start114873110
Hg19 End114873110
Hg38 Start114551946
Hg38 End114551946
Junction Sequence-
Target Gene
Target GeneLNCPOIR
Nearby Gene-
Distance-
Virus Information
Virus NameHuman T-lymphotropic Virus
Virus Subtype Name-
Virus Genome AccessionNot given
TaxonomyID11908
Virus AbbreviationHTLV-1
Virus Genome-
Virus Genome Length9046
Virus Breakpoint1-
Virus Breakpoint2-
Virus Gene Name-
Virus Region Type-
Integrated Virus Sequence-
ViMIC ID-