Virus Integration Site Database Data Release 2.0

Details for VISDB ID: TVIS44002911

Genomic Region Visualization (IGV)

Basic Information
VISDB IDTVIS44002911
Fusion NameHTLV-1-chr14 integration
ValidatedNo
Curated WayVISDB1.0
MethodHigh throughput sequenicng
Wet AssayNo
Sample IDATL14-D
Sample NameATL14-D
Sample TypeNontumor
Age35
Gender-
Disease Information
Disease NameAdult T-cell leukemia
Disease AbbreviationATL
CancerYes
Literature
PubMed ID28811663
JournalLeukemia
Published Year2017
Human Genome
Human Genome Version DescriptionGRCh37/hg19
Human Genome RefSeq AccessionGCF_000001405.13
Human Chromosomechr14
Cytogenetic Bandq12
Human Strand+
Human Integration Location TypeIntergenic
Hg19 Start28988367
Hg19 End28988367
Hg38 Start28519161
Hg38 End28519161
Junction Sequence-
Target Gene
Target GeneLINC02300
Nearby Gene-
Distance-
Virus Information
Virus NameHuman T-lymphotropic Virus
Virus Subtype Name-
Virus Genome AccessionNot given
TaxonomyID11908
Virus AbbreviationHTLV-1
Virus Genome-
Virus Genome Length9046
Virus Breakpoint1-
Virus Breakpoint2-
Virus Gene Name-
Virus Region Type-
Integrated Virus Sequence-
ViMIC ID-