Virus Integration Site Database Data Release 2.0

Details for VISDB ID: TVIS44004815

Genomic Region Visualization (IGV)

Basic Information
VISDB IDTVIS44004815
Fusion NameHTLV-1-chr11 integration
ValidatedNo
Curated WayVISDB1.0
MethodHigh throughput sequenicng
Wet AssayNo
Sample IDATL219
Sample NameATL219
Sample TypeNontumor
Age-
Gender-
Disease Information
Disease NameAdult T-cell leukemia
Disease AbbreviationATL
CancerYes
Literature
PubMed ID24735963
JournalBlood
Published Year2014
Human Genome
Human Genome Version DescriptionGRCh37/hg19
Human Genome RefSeq AccessionGCF_000001405.13
Human Chromosomechr11
Cytogenetic Bandq12.1
Human Strand+
Human Integration Location TypeIntergenic
Hg19 Start57245707
Hg19 End57245707
Hg38 Start57478234
Hg38 End57478234
Junction Sequence-
Target Gene
Target Gene-
Nearby GeneRTN4RL2,ENSG00000255301
Distance700
Virus Information
Virus NameHuman T-lymphotropic Virus
Virus Subtype Name-
Virus Genome AccessionNot given
TaxonomyID11908
Virus AbbreviationHTLV-1
Virus Genome-
Virus Genome Length9046
Virus Breakpoint1-
Virus Breakpoint2-
Virus Gene Name-
Virus Region Type-
Integrated Virus Sequence-
ViMIC ID-