| Basic Information ▶ | |
| VISDB ID | TVIS44005885 |
|---|---|
| Fusion Name | HTLV-1-SNHG22 integration |
| Validated | No |
| Curated Way | VISDB1.0 |
| Method | High throughput sequenicng |
| Wet Assay | No |
| Sample ID | ATL220 |
| Sample Name | ATL220 |
| Sample Type | Nontumor |
| Age | - |
| Gender | - |
| Disease Information ▶ | |
| Disease Name | Adult T-cell leukemia |
| Disease Abbreviation | ATL |
| Cancer | Yes |
| Literature ▶ | |
| PubMed ID | 24735963 |
| Journal | Blood |
| Published Year | 2014 |
| Human Genome ▶ | |
| Human Genome Version Description | GRCh37/hg19 |
| Human Genome RefSeq Accession | GCF_000001405.13 |
| Human Chromosome | chr18 |
| Cytogenetic Band | q21.1 |
| Human Strand | - |
| Human Integration Location Type | ncRNA_intronic |
| Hg19 Start | 47349532 |
| Hg19 End | 47349532 |
| Hg38 Start | 49823162 |
| Hg38 End | 49823162 |
| Junction Sequence | - |
| Target Gene ▶ | |
| Target Gene | SNHG22, ENSG00000266997, MYO5B |
| Nearby Gene | - |
| Distance | - |
| Virus Information ▶ | |
| Virus Name | Human T-lymphotropic Virus |
| Virus Subtype Name | - |
| Virus Genome Accession | Not given |
| TaxonomyID | 11908 |
| Virus Abbreviation | HTLV-1 |
| Virus Genome | - |
| Virus Genome Length | 9046 |
| Virus Breakpoint1 | - |
| Virus Breakpoint2 | - |
| Virus Gene Name | - |
| Virus Region Type | - |
| Integrated Virus Sequence | - |
| ViMIC ID | - |
Center for Precision Health
McWilliams School of Biomedical Informatics at UTHealth Houston
7000 Fannin Street, Suite 600, Houston, TX 77030
Email: Zhongming Zhao, Ph.D