Virus Integration Site Database Data Release 2.0

Details for VISDB ID: TVIS44007734

Genomic Region Visualization (IGV)

Basic Information
VISDB IDTVIS44007734
Fusion NameHTLV-1-ZNF37A integration
ValidatedNo
Curated WayVISDB1.0
MethodHigh throughput sequenicng
Wet AssayNo
Sample IDATL6
Sample NameATL6
Sample TypeNontumor
Age-
Gender-
Disease Information
Disease NameAdult T-cell leukemia
Disease AbbreviationATL
CancerYes
Literature
PubMed ID24735963
JournalBlood
Published Year2014
Human Genome
Human Genome Version DescriptionGRCh37/hg19
Human Genome RefSeq AccessionGCF_000001405.13
Human Chromosomechr10
Cytogenetic Bandp11.1
Human Strand+
Human Integration Location TypeIntronic
Hg19 Start38391362
Hg19 End38391362
Hg38 Start38102434
Hg38 End38102434
Junction Sequence-
Target Gene
Target GeneENSG00000302873, ZNF37A, PLD5P1
Nearby Gene-
Distance-
Virus Information
Virus NameHuman T-lymphotropic Virus
Virus Subtype Name-
Virus Genome AccessionNot given
TaxonomyID11908
Virus AbbreviationHTLV-1
Virus Genome-
Virus Genome Length9046
Virus Breakpoint1-
Virus Breakpoint2-
Virus Gene Name-
Virus Region Type-
Integrated Virus Sequence-
ViMIC ID-