Virus Integration Site Database Data Release 2.0

Details for VISDB ID: TVIS44008003

Genomic Region Visualization (IGV)

Basic Information
VISDB IDTVIS44008003
Fusion NameHTLV-1-LRRC52-AS1 integration
ValidatedNo
Curated WayVISDB1.0
MethodHigh throughput sequenicng
Wet AssayNo
Sample IDATL48
Sample NameATL48
Sample TypeNontumor
Age-
Gender-
Disease Information
Disease NameAdult T-cell leukemia
Disease AbbreviationATL
CancerYes
Literature
PubMed ID24735963
JournalBlood
Published Year2014
Human Genome
Human Genome Version DescriptionGRCh37/hg19
Human Genome RefSeq AccessionGCF_000001405.13
Human Chromosomechr1
Cytogenetic Bandq24.1
Human Strand-
Human Integration Location TypencRNA_intronic
Hg19 Start165490297
Hg19 End165490297
Hg38 Start165521060
Hg38 End165521060
Junction Sequence-
Target Gene
Target GeneLRRC52-AS1
Nearby Gene-
Distance-
Virus Information
Virus NameHuman T-lymphotropic Virus
Virus Subtype Name-
Virus Genome AccessionNot given
TaxonomyID11908
Virus AbbreviationHTLV-1
Virus Genome-
Virus Genome Length9046
Virus Breakpoint1-
Virus Breakpoint2-
Virus Gene Name-
Virus Region Type-
Integrated Virus Sequence-
ViMIC ID-