Virus Integration Site Database Data Release 2.0

Details for VISDB ID: TVIS44010554

Genomic Region Visualization (IGV)

Basic Information
VISDB IDTVIS44010554
Fusion NameHTLV-1-LOC105369670 integration
ValidatedNo
Curated WayVISDB1.0
MethodHigh throughput sequenicng
Wet AssayNo
Sample IDATL161
Sample NameATL161
Sample TypeNontumor
Age-
Gender-
Disease Information
Disease NameAdult T-cell leukemia
Disease AbbreviationATL
CancerYes
Literature
PubMed ID24735963
JournalBlood
Published Year2014
Human Genome
Human Genome Version DescriptionGRCh37/hg19
Human Genome RefSeq AccessionGCF_000001405.13
Human Chromosomechr12
Cytogenetic Bandp12.3
Human Strand-
Human Integration Location TypeIntronic
Hg19 Start15136212
Hg19 End15136212
Hg38 Start14983278
Hg38 End14983278
Junction Sequence-
Target Gene
Target Gene-
Nearby GenePDE6H
Distance1413
Virus Information
Virus NameHuman T-lymphotropic Virus
Virus Subtype Name-
Virus Genome AccessionNot given
TaxonomyID11908
Virus AbbreviationHTLV-1
Virus Genome-
Virus Genome Length9046
Virus Breakpoint1-
Virus Breakpoint2-
Virus Gene Name-
Virus Region Type-
Integrated Virus Sequence-
ViMIC ID-