Virus Integration Site Database Data Release 2.0

Details for VISDB ID: TVIS44012195

Genomic Region Visualization (IGV)

Basic Information
VISDB IDTVIS44012195
Fusion NameHTLV-1-ADAMTS9-AS2 integration
ValidatedNo
Curated WayVISDB1.0
MethodHigh throughput sequenicng
Wet AssayNo
Sample IDATL112
Sample NameATL112
Sample TypeNontumor
Age-
Gender-
Disease Information
Disease NameAdult T-cell leukemia
Disease AbbreviationATL
CancerYes
Literature
PubMed ID24735963
JournalBlood
Published Year2014
Human Genome
Human Genome Version DescriptionGRCh37/hg19
Human Genome RefSeq AccessionGCF_000001405.13
Human Chromosomechr3
Cytogenetic Bandp14.1
Human Strand+
Human Integration Location TypencRNA_intronic
Hg19 Start64833865
Hg19 End64833865
Hg38 Start64848190
Hg38 End64848190
Junction Sequence-
Target Gene
Target GeneADAMTS9-AS2
Nearby Gene-
Distance-
Virus Information
Virus NameHuman T-lymphotropic Virus
Virus Subtype Name-
Virus Genome AccessionNot given
TaxonomyID11908
Virus AbbreviationHTLV-1
Virus Genome-
Virus Genome Length9046
Virus Breakpoint1-
Virus Breakpoint2-
Virus Gene Name-
Virus Region Type-
Integrated Virus Sequence-
ViMIC ID-