Virus Integration Site Database Data Release 2.0

Details for VISDB ID: TVIS44012519

Genomic Region Visualization (IGV)

Basic Information
VISDB IDTVIS44012519
Fusion NameHTLV-1-LILRB2 integration
ValidatedNo
Curated WayVISDB1.0
MethodHigh throughput sequenicng
Wet AssayNo
Sample IDATL102
Sample NameATL102
Sample TypeNontumor
Age-
Gender-
Disease Information
Disease NameAdult T-cell leukemia
Disease AbbreviationATL
CancerYes
Literature
PubMed ID24735963
JournalBlood
Published Year2014
Human Genome
Human Genome Version DescriptionGRCh37/hg19
Human Genome RefSeq AccessionGCF_000001405.13
Human Chromosomechr19
Cytogenetic Bandq13.42
Human Strand-
Human Integration Location TypeExonic
Hg19 Start54783926
Hg19 End54783926
Hg38 Start54280071
Hg38 End54280071
Junction Sequence-
Target Gene
Target GeneLILRB2
Nearby Gene-
Distance-
Virus Information
Virus NameHuman T-lymphotropic Virus
Virus Subtype Name-
Virus Genome AccessionNot given
TaxonomyID11908
Virus AbbreviationHTLV-1
Virus Genome-
Virus Genome Length9046
Virus Breakpoint1-
Virus Breakpoint2-
Virus Gene Name-
Virus Region Type-
Integrated Virus Sequence-
ViMIC ID-