Virus Integration Site Database Data Release 2.0

Details for VISDB ID: TVIS44014549

Genomic Region Visualization (IGV)

Basic Information
VISDB IDTVIS44014549
Fusion NameHTLV-1-VCPKMT integration
ValidatedNo
Curated WayVISDB1.0
MethodHigh throughput sequenicng
Wet AssayNo
Sample IDATL182
Sample NameATL182
Sample TypeNontumor
Age-
Gender-
Disease Information
Disease NameAdult T-cell leukemia
Disease AbbreviationATL
CancerYes
Literature
PubMed ID24735963
JournalBlood
Published Year2014
Human Genome
Human Genome Version DescriptionGRCh37/hg19
Human Genome RefSeq AccessionGCF_000001405.13
Human Chromosomechr14
Cytogenetic Bandq21.3
Human Strand+
Human Integration Location TypeIntronic
Hg19 Start50572402
Hg19 End50572402
Hg38 Start50105684
Hg38 End50105684
Junction Sequence-
Target Gene
Target Gene-
Nearby GeneLINC01588
Distance563
Virus Information
Virus NameHuman T-lymphotropic Virus
Virus Subtype Name-
Virus Genome AccessionNot given
TaxonomyID11908
Virus AbbreviationHTLV-1
Virus Genome-
Virus Genome Length9046
Virus Breakpoint1-
Virus Breakpoint2-
Virus Gene Name-
Virus Region Type-
Integrated Virus Sequence-
ViMIC ID-