Virus Integration Site Database Data Release 2.0

Details for VISDB ID: TVIS44015137

Genomic Region Visualization (IGV)

Basic Information
VISDB IDTVIS44015137
Fusion NameHTLV-1-LRIG2 integration
ValidatedNo
Curated WayVISDB1.0
MethodHigh throughput sequenicng
Wet AssayNo
Sample IDATL36
Sample NameATL36
Sample TypeNontumor
Age-
Gender-
Disease Information
Disease NameAdult T-cell leukemia
Disease AbbreviationATL
CancerYes
Literature
PubMed ID24735963
JournalBlood
Published Year2014
Human Genome
Human Genome Version DescriptionGRCh37/hg19
Human Genome RefSeq AccessionGCF_000001405.13
Human Chromosomechr1
Cytogenetic Bandp13.2
Human Strand+
Human Integration Location TypeIntronic
Hg19 Start113656848
Hg19 End113656848
Hg38 Start113114226
Hg38 End113114226
Junction Sequence-
Target Gene
Target GeneLRIG2, ENSG00000303525
Nearby Gene-
Distance-
Virus Information
Virus NameHuman T-lymphotropic Virus
Virus Subtype Name-
Virus Genome AccessionNot given
TaxonomyID11908
Virus AbbreviationHTLV-1
Virus Genome-
Virus Genome Length9046
Virus Breakpoint1-
Virus Breakpoint2-
Virus Gene Name-
Virus Region Type-
Integrated Virus Sequence-
ViMIC ID-