Virus Integration Site Database Data Release 2.0

Details for VISDB ID: TVIS44017754

Genomic Region Visualization (IGV)

Basic Information
VISDB IDTVIS44017754
Fusion NameHTLV-1-PTPN21 integration
ValidatedNo
Curated WayVISDB1.0
MethodHigh throughput sequenicng
Wet AssayNo
Sample IDHAM/TSP#1
Sample NameHAM/TSP#1
Sample TypeNontumor
Age-
Gender-
Disease Information
Disease NameHTLV-1 associated myelopathy/tropical spastic paraparesis
Disease Abbreviation-
CancerNo
Literature
PubMed ID29186194
JournalPLOS Pathogens
Published Year2017
Human Genome
Human Genome Version DescriptionGRCh37/hg19
Human Genome RefSeq AccessionGCF_000001405.13
Human Chromosomechr14
Cytogenetic Bandq31.3
Human Strand+
Human Integration Location TypeIntronic
Hg19 Start88975134
Hg19 End88975134
Hg38 Start88508790
Hg38 End88508790
Junction Sequence-
Target Gene
Target GeneENSG00000258983, PTPN21
Nearby Gene-
Distance-
Virus Information
Virus NameHuman T-lymphotropic Virus
Virus Subtype Name-
Virus Genome AccessionNot given
TaxonomyID11908
Virus AbbreviationHTLV-1
Virus Genome-
Virus Genome Length9046
Virus Breakpoint1-
Virus Breakpoint2-
Virus Gene Name-
Virus Region Type-
Integrated Virus Sequence-
ViMIC ID-