| Basic Information ▶ | |
| VISDB ID | TVIS44019294 |
|---|---|
| Fusion Name | HTLV-1-HPGD integration |
| Validated | No |
| Curated Way | VISDB1.0 |
| Method | High throughput sequenicng |
| Wet Assay | No |
| Sample ID | HAM/TSP#2 |
| Sample Name | HAM/TSP#2 |
| Sample Type | Nontumor |
| Age | - |
| Gender | - |
| Disease Information ▶ | |
| Disease Name | HTLV-1 associated myelopathy/tropical spastic paraparesis |
| Disease Abbreviation | - |
| Cancer | No |
| Literature ▶ | |
| PubMed ID | 29186194 |
| Journal | PLOS Pathogens |
| Published Year | 2017 |
| Human Genome ▶ | |
| Human Genome Version Description | GRCh37/hg19 |
| Human Genome RefSeq Accession | GCF_000001405.13 |
| Human Chromosome | chr4 |
| Cytogenetic Band | q34.1 |
| Human Strand | + |
| Human Integration Location Type | Intronic |
| Hg19 Start | 175420567 |
| Hg19 End | 175420567 |
| Hg38 Start | 174499416 |
| Hg38 End | 174499416 |
| Junction Sequence | - |
| Target Gene ▶ | |
| Target Gene | HPGD |
| Nearby Gene | - |
| Distance | - |
| Virus Information ▶ | |
| Virus Name | Human T-lymphotropic Virus |
| Virus Subtype Name | - |
| Virus Genome Accession | Not given |
| TaxonomyID | 11908 |
| Virus Abbreviation | HTLV-1 |
| Virus Genome | - |
| Virus Genome Length | 9046 |
| Virus Breakpoint1 | - |
| Virus Breakpoint2 | - |
| Virus Gene Name | - |
| Virus Region Type | - |
| Integrated Virus Sequence | - |
| ViMIC ID | - |
Center for Precision Health
McWilliams School of Biomedical Informatics at UTHealth Houston
7000 Fannin Street, Suite 600, Houston, TX 77030
Email: Zhongming Zhao, Ph.D